STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaSRhamnose ABC transporter rhamnose-binding protein. (331 aa)    
Predicted Functional Partners:
Avi_6269
ABC transporter membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
  0.989
Avi_6268
ABC transporter membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
  0.984
rbsA-5
ABC transporter nucleotide binding/ATPase protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.969
Avi_6271
Sugar kinase.
 
  
 0.888
rhaU
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
    0.882
Avi_6265
Transcriptional regulator DeoR family.
 
    0.876
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.855
rhaI
L-rhamnose catabolism isomerase.
 
     0.812
cvgS
Two component sensor kinase/response regulator hybrid.
   
 
 0.696
Avi_0522
Two component sensor kinase/response regulator hybrid.
  
 
 0.682
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.