STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_6275ABC transporter membrane spanning protein (spermidine/putrescine). (272 aa)    
Predicted Functional Partners:
Avi_6277
ABC transporter membrane spanning protein (spermidine/putrescine).
  
 0.967
Avi_6278
ABC transporter substrate binding protein (spermidine/putrescine).
 
  
 0.928
Avi_6279
ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine); Belongs to the ABC transporter superfamily.
 
  
 0.908
Avi_6274
Hydantoin Racemase.
 
     0.883
Avi_5874
ABC transporter membrane spanning protein (spermidine/putrescine).
  
 0.840
Avi_5836
ABC transporter substrate binding protein (spermidine/putrescine).
 
  
 0.839
Avi_5885
ABC transporter substrate binding protein (spermidine/putrescine).
 
  
 0.838
Avi_5880
ABC transporter substrate binding protein (spermidine/putrescine).
 
  
 0.830
Avi_5839
ABC transporter membrane spanning protein (spermidine/putrescine).
  
 0.792
potB-2
ABC transporter membrane spanning protein.
  
 0.738
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.