STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaAPrepilin peptidase protein. (170 aa)    
Predicted Functional Partners:
cpaB
Pilus assembly protein.
 
  
 0.968
pilA-2
Component of type IV pilus.
 
  
 0.941
Arad_0368
Pilus assembly protein.
 
  
 0.939
cpaE
Pilus assembly protein.
 
  
 0.938
cpaC
Pilus assembly secretion protein; Belongs to the bacterial secretin family.
 
  
 0.932
pilA
Component of type IV pilus.
 
  
 0.922
cpaD
Pilus assembly protein.
 
     0.871
Arad_0357
Conserved hypothetical protein.
 
  
 0.870
Arad_0369
Pilus assembly protein.
 
   
 0.846
Arad_0356
Conserved hypothetical protein.
 
  
 0.839
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.