Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtBPhytoene synthase protein. (286 aa)    
Predicted Functional Partners:
ispB
Octaprenyl-diphosphate synthase protein; Belongs to the FPP/GGPP synthase family.
  
 0.986
ispA
Geranyltranstransferase protein; Belongs to the FPP/GGPP synthase family.
  
 0.982
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.960
Arad_2138
Conserved hypothetical protein.
 
     0.952
secD2
Protein-export translocase protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.885
Arad_3394
Conserved hypothetical protein.
  
 0.842
Arad_7635
Non-ribosomal peptide synthetase.
   
 0.802
etf
Electrotransfer ubiquinone oxidoreductase protein; Accepts electrons from ETF and reduces ubiquinone.
 
 
 0.767
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.744
Arad_0962
acetoacetyl-CoA synthase.
 
  
 0.706
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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