STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nahSalicylate hydroxylase protein. (343 aa)    
Predicted Functional Partners:
Arad_2204
Conserved hypothetical protein.
 
     0.703
nah-3
Salicylate hydroxylase protein.
  
  
 
0.645
Arad_2203
Hydrolase protein.
 
  
 0.580
pobA
4-hydroxybenzoate 3-monooxygenase.
 
   
 0.551
Arad_3478
Urea or short-chain amide ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
   
  
 0.527
pcaC
4-carboxymuconolactone decarboxylase.
     
 0.524
Arad_1840
Acyl CoA-acyl carrier protein transacylase.
 
 
 0.518
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
     
 0.515
Arad_8273
Branched-chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
   
    0.511
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit.
     
 0.493
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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