Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Arad_3206ABC transporter. (617 aa)    
Predicted Functional Partners:
Arad_3350
Sucrose ABC transporter.
     
  0.951
Arad_3205
ABC transporter.
 
  
 
0.886
Arad_7635
Non-ribosomal peptide synthetase.
  
 0.805
Arad_3241
ABC transporter.
    
  0.789
Arad_1840
Acyl CoA-acyl carrier protein transacylase.
  
 0.680
Arad_1203
Deacetylase protein.
  
 0.458
Arad_1624
ABC transporter.
  
 
0.429
aphA
Acetylpolyamine aminohydrolase protein.
  
 0.418
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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