STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_3453Nitrate/sulfonate ABC transporter. (377 aa)    
Predicted Functional Partners:
Arad_3450
Nitrate/sulfonate ABC transporter.
 
  
 0.962
Arad_3455
Nitrate/sulfonate ABC transporter.
 
  
 0.932
Arad_3452
Nitrate/sulfonate ABC transporter.
 
    
0.859
Arad_3451
Hypothetical protein.
       0.783
Arad_9872
Nitrate/sulfonate/bicarbonate ABC transporter.
 
  
 0.773
Arad_9869
Nitrate/sulfonate ABC transporter.
 
  
 0.761
Arad_7223
Aliphatic sulphonate ABC transporter.
 
     0.695
hydA
Dihydropyrimidinase.
 
     0.672
Arad_3527
Nitrate/sulfonate/bicarbonate ABC transporter.
 
  
 0.625
Arad_3441
Dihydroorotate oxidase protein.
 
     0.617
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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