STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_3528Nitrate/sulfonate/bicarbonate ABC transporter. (249 aa)    
Predicted Functional Partners:
Arad_3530
FAD linked oxidase protein.
 
     0.929
Arad_3527
Nitrate/sulfonate/bicarbonate ABC transporter.
  
 0.916
Arad_3531
NAD(P)H dehydrogenase protein.
 
     0.912
Arad_3525
Nitrate/sulfonate/bicarbonate ABC transporter.
 
  
 0.884
codAch2
Cytosine deaminase protein; Catalyzes the deamination of many pterin metabolites, such as formylpterin, pterin-6-carboxylate, pterin-7-carboxylate, pterin, hydroxymethylpterin, biopterin, D-(+)-neopterin, isoxanthopterin, sepiapterin, folate, xanthopterin, and 7,8-dihydrohydroxymethylpterin. May be involved in a degradative pathway for catabolizing pterin rings. Belongs to the metallo-dependent hydrolases superfamily. Pterin deaminase family.
 
    0.873
Arad_9872
Nitrate/sulfonate/bicarbonate ABC transporter.
 
  
 0.769
tauC-4
Taurine uptake ABC transporter.
  
     0.685
Arad_7224
Amino acid ABC transporter.
  
 0.617
Arad_9869
Nitrate/sulfonate ABC transporter.
  
 0.604
Arad_3523
Creatininase (creatinine amidohydrolase) protein.
 
     0.582
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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