STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_3786N-formylglutamate amidohydrolase protein. (228 aa)    
Predicted Functional Partners:
Arad_3787
Conserved hypothetical protein.
      0.818
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
     0.545
Arad_3176
Conserved hypothetical protein.
  
     0.513
hutF
Formiminoglutamate deiminase.
     
  0.499
Arad_3784
Conserved hypothetical membrane protein.
       0.480
Arad_3789
Conserved hypothetical protein; Belongs to the UPF0335 family.
 
     0.476
Arad_0786
Conserved hypothetical protein.
  
     0.442
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.