STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_4580Peptidase protein. (608 aa)    
Predicted Functional Partners:
mrcA
Penicillin binding peptidoglycan synthetase protein.
 
   
 0.663
Arad_0213
Penicillin binding protein.
  
   
 0.659
pbp
Cell wall biosynthesis penicillin-binding protein.
  
   
 0.621
Arad_4581
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.574
Arad_4582
Plasmid stabilization protein.
       0.574
lepB
Signal peptidase I protein; Belongs to the peptidase S26 family.
 
  
 0.499
mntH-2
Manganese transporter protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
    0.499
lepB-2
Signal peptidase I protein; Belongs to the peptidase S26 family.
 
  
 0.484
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
   
 0.461
mltG
Conserved hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
  
 0.450
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.