Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
acd2acyl-CoA dehydrogenase protein. (397 aa)    
Predicted Functional Partners:
fadB2
enoyl-CoA hydratase protein.
 
 0.994
Arad_4636
Conserved hypothetical protein.
 
  
 0.980
Arad_4632
Conserved hypothetical protein.
 
     0.978
Arad_4633
serine--tRNA ligase protein.
 
 
   0.978
manB3
Beta-mannosidase protein.
 
     0.976
fadA
acyl-CoA thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.970
mccA
methylcrotonoyl-CoA carboxylase non-biotinylated subunit protein.
  
 
 0.964
Arad_9261
acyl-CoA dehydrogenase protein.
  
  
  0.958
Arad_1376
acetyl-CoA carboxylase, biotin carboxylase.
  
 0.956
putA
Proline 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.953
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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