STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avhB3Type IV secretion protein AvhB3. (112 aa)    
Predicted Functional Partners:
avhB4
Type IV secretion protein AvhB4.
  
 
 0.995
avhB8
Type IV secretion protein AvhB8.
  
 
 0.989
avhB10
Type IV secretion protein AvhB10.
  
 
 0.987
avhB6
Type IV secretion protein AvhB6.
  
 
 0.987
avhB2
Type IV secretion protein avhB2.
     
 0.967
avhB5
Type IV secretion protein AvhB5.
   
 
 0.953
avhB9
Type IV secretion protein AvhB9.
  
  
 0.951
avhB11
Type IV secretion protein AvhB11.
  
  
 0.938
avhB1
Type IV secretion protein AvhB1.
     
 0.935
Arad_4794
Conserved hypothetical protein.
       0.791
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.