STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
repCa1Plasmid replication protein RepCa1. (369 aa)    
Predicted Functional Partners:
repAa1
Plasmid partitioning protein RepAa1.
 
   
 0.889
repBf2
Plasmid partitioning protein RepBf2; Belongs to the ParB family.
 
   
 0.814
Arad_7004
Conserved Hypothetical Protein.
       0.773
avhB5
Type IV secretion protein AvhB5.
  
     0.611
avhB2
Type IV secretion protein avhB2.
  
     0.597
intA
Site-specific integrase protein; Belongs to the 'phage' integrase family.
  
   
 0.538
avhB9
Type IV secretion protein AvhB9.
  
     0.447
avhB8
Type IV secretion protein AvhB8.
  
     0.434
Arad_0715
Conserved hypothetical protein.
  
     0.428
Arad_7780
Insertion sequence transposase protein.
  
     0.413
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.