STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7110Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. (321 aa)    
Predicted Functional Partners:
Arad_7109
ABC transporter substrate-binding protein.
       0.613
Arad_7114
FAD-dependent oxidoreductase protein.
  
  
 0.596
fadB1-3
enoyl-CoA hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.569
Arad_7113
Indolepyruvate ferredoxin oxidoreductase chain alpha.
       0.565
flgF
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.463
Arad_7635
Non-ribosomal peptide synthetase.
   
 
 0.442
Arad_1840
Acyl CoA-acyl carrier protein transacylase.
   
 
 0.421
Arad_7105
Polyamine ABC transporter.
       0.415
potA-3
ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
       0.415
Arad_7115
L-asparagine operon transcriptional regulator (repressor) protein.
       0.402
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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