STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7137Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily. (348 aa)    
Predicted Functional Partners:
dppCch3-2
Dipeptide ABC transporter.
    0.936
Arad_7140
Peptide ABC transporter.
 
    0.908
appD
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
  
0.868
Arad_7141
Dipeptide ABC transporter.
 
    0.818
Arad_7134
Hydantoin racemase protein.
 
     0.686
appD-2
Oligopeptide ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.612
Arad_8789
Oligopeptide ABC transporter.
 
    0.539
oppC
Oligopeptide ABC transporter.
 
    0.535
dppCch1-7
Dipeptide ABC transporter.
 
    0.534
Arad_7686
Oligopeptide ABC transporter.
 
    0.512
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.