STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7241Multidrug resistance efflux pump protein. (383 aa)    
Predicted Functional Partners:
Arad_7242
Conserved hypothetical protein.
 
 
 0.961
Arad_7289
Multidrug resistance efflux system protein; Belongs to the major facilitator superfamily.
 
 
 0.836
Arad_3942
Multidrug efflux transporter; Belongs to the major facilitator superfamily.
 
 
 0.835
Arad_2429
Multidrug resistance protein; Belongs to the major facilitator superfamily.
 
 
 0.811
Arad_1651
Conserved hypothetical protein.
 
 
 0.783
Arad_9126
ABC transporter; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.736
nodTch
Nodulation protein (outer membrane efflux protein).
 
 
 0.702
nodTch-2
Nodulation protein (outer membrane efflux protein).
 
 
 0.700
Arad_4028
Efflux transporter; Belongs to the major facilitator superfamily.
 
 
 0.577
Arad_8010
Transporter.
 
 
 0.564
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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