STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Arad_72554-hydroxy-2-oxovalerate aldolase protein; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (338 aa)    
Predicted Functional Partners:
Arad_7256
Acetaldehyde dehydrogenase protein; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
 0.998
Arad_7264
Hydratase/decarboxylase.
 
 
 0.986
Arad_7260
Glyoxalase/bleomycin resistance protein/dioxygenase protein.
 
   
 0.904
Arad_7266
4-oxalocrotonate decarboxylase.
 
  
 0.874
Arad_7267
Oxidoreductase protein.
 
   
 0.785
stcD
2,4-dienoyl-CoA reductase (NADPH) protein.
  
  
 0.784
Arad_7257
Conserved hypothetical protein.
       0.781
Arad_7268
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.773
Arad_7207
Glyoxalase/Bleomycin resistance protein.
 
   
 0.695
leuC
3-isopropylmalate dehydratase large subunit protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.693
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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