STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7273Xylose isomerase domain protein. (294 aa)    
Predicted Functional Partners:
aroEc
Shikimate 5-dehydrogenase protein.
 
    0.606
Arad_7274
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein.
       0.535
Arad_2925
FldX protein.
  
     0.520
Arad_2918
Conserved hypothetical protein.
 
     0.460
Arad_2917
Metapyrocatechase; catechol 2,3-dioxygenase.
  
     0.458
iolB
Myo-inositol catabolism protein.
  
  
 0.419
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit.
  
   
 0.416
iolC
Myo-inositol catabolism.
  
  
 0.409
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.