STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7457D-erythrulose 4-phosphate dehydrogenase. (310 aa)    
Predicted Functional Partners:
smoC-2
Sorbitol/mannitol operon transcriptional regulator protein.
 
   
 0.894
lyxX
L-xylulose kinase protein; Belongs to the FGGY kinase family.
 
  
 0.892
tpiA-2
Triosephosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of L-erythrulose 1-phosphate to D-erythrulose 4- phosphate.
 
   
 0.859
rpiB
Ribose 5-phosphate isomerase protein; Involved in catabolism of D-apiose. Catalyzes the isomerization of D-erythrulose 4-phosphate to D-erythrose 4-phosphate.
 
   
 0.818
glpD-2
Glycerol-3-phosphate dehydrogenase protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
   
 0.790
Arad_7462
Conserved hypothetical protein.
 
     0.776
Arad_7467
Ribose ABC transporter.
  
    0.751
Arad_9235
Conserved hypothetical protein.
  
     0.702
glpRb-3
Glycerol-3-phosphate transcriptional regulator protein.
 
    0.664
lyxX-2
L-xylulose kinase protein; Belongs to the FGGY kinase family.
 
  
 0.617
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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