STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7579Cyd operon protein YbgT. (37 aa)    
Predicted Functional Partners:
Arad_7580
Cytochrome bd-type quinal oxidase subunit 2.
 
 0.996
Arad_7581
Cytochrome d oxidase.
 
 
 0.961
Arad_7582
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC.
 
  
 0.918
cydD
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD.
 
  
 0.917
cydB
Cytochrome d ubiquinol oxidase, subunit II.
  
 
 0.756
Arad_7584
Conserved hypothetical protein.
 
     0.730
Arad_7908
Cytochrome bd ubiquinol oxidase, subunit I.
  
 
 0.722
sdhB
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.499
sdhA
Succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.499
sdhC
Succinate dehydrogenase, cytochrome b556 subunit.
     
  0.499
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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