STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB11dTransport secretion system IV. (367 aa)    
Predicted Functional Partners:
Arad_7600
Conserved hypothetical protein.
 
     0.805
Arad_7602
Conserved hypothetical protein.
       0.781
pgl
6-phosphogluconolactonase protein; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
  
 0.560
Arad_1240
Chloranphenicol phosphotransferase protein.
  
     0.538
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
  
 0.519
Arad_1534
Conserved hypothetical membrane protein.
  
   
 0.493
Arad_2314
Conserved hypothetical protein.
  
     0.479
cyaH
Adenylate/guanylate cyclase protein.
  
     0.432
Arad_4596
Transcriptional regulator protein.
 
 
 
 0.425
Arad_3094
Conserved hypothetical protein.
  
     0.417
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.