STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7779Insertion sequence transposase protein. (332 aa)    
Predicted Functional Partners:
Arad_7781
Insertion sequence transposase protein.
 
    
0.628
Arad_7780
Insertion sequence transposase protein.
 
    
0.577
Arad_7803
Transposase protein.
  
     0.540
Arad_7802
TniB NTP-binding protein.
  
    0.531
Arad_4742
Transposase.
  
     0.500
Arad_7801
Conserved hypothetical protein.
  
     0.455
Arad_7179
Transposase.
  
     0.452
Arad_7778
Transposase.
  
     0.432
Arad_7785
Transposase.
  
     0.415
repAa1
Plasmid partitioning protein RepAa1.
  
     0.405
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.