STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_7994Outer membrane pathogenesis protein. (4272 aa)    
Predicted Functional Partners:
Arad_7993
Hypothetical protein.
       0.773
rzcA
rhizobiocin/RTX toxin and hemolysin-type calcium binding protein.
  
   
 0.707
Arad_0321
Conserved hypothetical protein.
  
     0.611
Arad_7995
Conserved hypothetical signal peptide protein.
     
 0.517
Arad_8321
Urease-associated protein.
  
     0.510
Arad_9835
Multidrug ABC-transporter.
 
     0.445
avhB1
Type IV secretion protein AvhB1.
  
   
 0.400
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.