STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_8077Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. (288 aa)    
Predicted Functional Partners:
Arad_8071
Histone acetyltransferase HPA2.
 
     0.946
Arad_8075
Conserved hypothetical protein.
 
   
 0.944
Arad_8069
Radical SAM protein.
 
     0.943
Arad_8072
AIR synthase protein.
 
     0.940
Arad_8074
Glycosyltransferase protein.
 
  
 0.938
Arad_8067
Nitrilase.
 
     0.936
Arad_8076
FAD-dependent oxidoreductase protein.
 
   
 0.909
Arad_8066
Conserved hypothetical protein.
 
     0.899
Arad_8064
Transcriptional regulator protein.
 
    0.790
Arad_1793
Glycosyltransferase protein.
  
  
 0.605
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.