STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_8152Transcriptional regulator protein. (336 aa)    
Predicted Functional Partners:
Arad_4811
Transcriptional regulator protein.
  
     0.708
soxDch
Sarcosine oxidase delta subunit protein.
 
    0.665
Arad_3111
Transcriptional regulator protein.
  
   0.645
Arad_4175
Transcriptional regulator protein.
  
   0.630
Arad_7185
Helix-turn-helix, AraC type:ThiJ/PfpI.
  
     0.627
soxGch
Sarcosine oxidase gamma subunit protein.
 
    0.613
soxAch
Sarcosine oxidase alpha subunit protein.
 
     0.593
soxDe-2
Sarcosine oxidase delta subunit protein.
 
    0.574
soxDe
Sarcosine oxidase delta subunit protein.
 
    0.549
Arad_8151
Proline racemase protein; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.
       0.528
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.