Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Arad_8317Alpha-galactosidase. (696 aa)    
Predicted Functional Partners:
lacZ1
beta-D-galactosidase protein.
 
  
 0.998
aglA
Alpha-glucosidase protein.
 
 
 0.971
Arad_3280
Alpha-glucosidase protein.
 
 
 0.971
galM
Aldose epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.970
hexA
beta-N-acetylhexosaminidase protein.
    
 0.956
gal
D-galactose-1-dehydrogenase protein.
    
  0.951
lacZ1-2
beta-D-galactosidase protein.
 
  
 0.920
Arad_8314
Sugar ABC transporter.
 
    0.915
Arad_8316
Sugar ABC transporter.
 
    0.912
Arad_8319
Sugar ABC transporter; Belongs to the ABC transporter superfamily.
  
    0.904
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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