STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_8532Sugar ABC transporter. (264 aa)    
Predicted Functional Partners:
Arad_8531
Sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
   0.964
Arad_8530
Sugar ABC transporter.
 
   0.917
idhA-4
Myo-inositol 2-dehydrogenase protein.
 
    0.824
Arad_8533
Hydroxypyruvate isomerase protein; Belongs to the hyi family.
 
     0.823
Arad_8169
Sugar ABC transporter.
  
   0.815
Arad_8170
Sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
   0.799
Arad_0112
Sugar ABC transporter.
  
   0.797
iolC
Myo-inositol catabolism.
 
  
 0.728
iolD-2
Myo-inositol catabolism; Belongs to the TPP enzyme family.
 
  
 0.703
iolB
Myo-inositol catabolism protein.
 
  
 0.698
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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