Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppCch2Dipeptide ABC transporter. (271 aa)    
Predicted Functional Partners:
dppBf-3
Dipeptide ABC transporter.
 
  0.941
oppD-2
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
  0.935
Arad_8562
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
  0.906
dppAch2-2
Dipeptide ABC transporter.
 
  0.901
Arad_7140
Peptide ABC transporter.
  
  0.846
dppBf-2
Dipeptide ABC transporter.
 
  0.845
Arad_8905
Peptide ABC transporter.
  
  0.844
appB-2
Oligopeptide ABC transporter.
  
  0.841
Arad_8266
Peptide ABC transporter.
  
  0.840
Arad_9940
Dipeptide ABC transporter.
  
  0.840
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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