STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occQchOctopine ABC transporter. (239 aa)    
Predicted Functional Partners:
occPch-2
Octopine ABC transporter.
 
 
 0.992
occT
Octopine ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
 0.986
nocT
Nopaline binding protein of ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
 0.960
occMch
Octopine ABC transporter.
 
 
0.916
nocQ
Nopaline ABC transporter.
  
  
 
0.912
Arad_7488
Amino acid ABC transporter.
 
 
  0.825
Arad_9296
Amino acid ABC transporter.
 
 
  0.820
Arad_2710
Amino acid ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
 
 0.789
Arad_7346
Amino acid ABC transporter.
 
  
 0.770
Arad_7980
Amino acid ABC transporter.
 
 
 0.734
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.