STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose bisphosphate carboxylaseoxygenase; Involved in catabolism of D-apiose. Catalyzes the decarboxylation of 3-oxo-isoapionate 4-phosphate to L-erythrulose 1- phosphate; Belongs to the RuBisCO large chain family. (419 aa)    
Predicted Functional Partners:
Arad_9231
Conserved hypothetical protein.
 
   
 0.982
apnO
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes the conversion of D-apionate to 3-oxo-isoapionate.
 
   
 0.966
apsD
Oxidoreductase protein; Involved in catabolism of D-apiose. Catalyzes oxidation of D- apiose to D-apionolactone; Belongs to the Gfo/Idh/MocA family.
 
   
 0.899
Arad_4498
Phosphoserine phosphatase.
  
  
 0.827
Arad_9239
Conserved hypothetical protein.
 
     0.758
Arad_9233
Ribose ABC transporter.
 
  
 0.755
Arad_2761
Acetyltransferase protein.
    
 
 0.747
atpI
ATP synthase protein; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
      
 0.744
Arad_9228
Transcriptional regulator protein.
 
     0.737
Arad_9235
Conserved hypothetical protein.
 
     0.647
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.