STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appF-3Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily. (318 aa)    
Predicted Functional Partners:
appC-2
Oligopeptide ABC transporter.
 
 0.917
appD-5
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
   
0.864
appB-2
Oligopeptide ABC transporter.
 
  
 0.853
dapAch1-2
Dihydrodipicolinate synthase protein; Belongs to the DapA family.
  
    0.782
oppC
Oligopeptide ABC transporter.
 
 0.690
Arad_8789
Oligopeptide ABC transporter.
 
 0.680
appA
Oligopeptide ABC transporter.
 
 
 0.661
appD-2
Oligopeptide ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.659
Arad_9772
Acetyltransferase protein.
 
     0.644
Arad_7686
Oligopeptide ABC transporter.
 
 0.592
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.