STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ64119.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (399 aa)    
Predicted Functional Partners:
CTQ64115.1
YCII-related domain protein.
 
     0.954
CTQ64111.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.875
CTQ79704.1
YCII-related domain protein.
 
     0.791
CTQ74078.1
Transcriptional regulator, y4mF family.
  
     0.530
CTQ80341.1
Hypothetical protein; RibD C-terminal domain.
  
     0.524
CTQ75993.1
Hypothetical protein.
 
    0.509
exsA_2
Exoenzyme S synthesis regulatory protein ExsA.
  
     0.502
btr_3
Bacillibactin transport regulator.
  
     0.492
CTQ64108.1
NUDIX domain protein.
       0.474
CTQ77047.1
Putative enzyme related to lactoylglutathione lyase.
 
     0.473
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.