STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoD_3D-galactonate dehydratase. (370 aa)    
Predicted Functional Partners:
betB_2
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.794
gabR_3
HTH-type transcriptional regulatory protein GabR.
 
     0.660
ykfB_2
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.660
CTQ69019.1
2-keto-3-deoxy-galactonokinase.
  
 
 0.576
catB
Muconate cycloisomerase 1.
  
  
0.562
pksL
Polyketide synthase PksL.
    
  0.543
ttuE
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.541
dgoD_2
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.540
potF_2
Putrescine-binding periplasmic protein precursor.
 
     0.515
lutR_4
L-lactate utilization operon repressor.
       0.409
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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