STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA_2Copper-exporting P-type ATPase A. (517 aa)    
Predicted Functional Partners:
ctpF
Putative cation-transporting ATPase F.
 
 
 0.722
epsJ
Putative glycosyltransferase EpsJ.
  
  
 0.561
copA_1
Putative copper-importing P-type ATPase A.
  
     0.549
pimB_3
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.
  
    0.530
CTQ68319.1
Blue-light-activated protein.
  
     0.525
CTQ77703.1
Hypothetical protein.
  
     0.513
araC_1
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
       0.512
CTQ76245.1
Oligosaccharyl transferase, archaeosortase A system-associated.
  
     0.511
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.497
mco_2
Multicopper oxidase mco.
 
 
 0.481
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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