STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntR_3Gluconate utilization system GNT-I transcriptional repressor. (341 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.814
rafR_1
Raffinose operon repressor.
  
     0.754
rafR_2
Raffinose operon repressor.
  
     0.742
lsrD_3
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.682
CTQ75612.1
ABC-type sugar transport system, periplasmic component.
 
 
  0.667
ccpA_5
Glucose-resistance amylase regulator.
  
 
  0.617
rbsA_9
Ribose import ATP-binding protein RbsA.
  
 
  0.604
ptsH
Phosphocarrier protein HPr.
 
 
 
 0.555
luxP
Autoinducer 2-binding periplasmic protein LuxP precursor.
 
 
  0.469
xylG_2
Xylose import ATP-binding protein XylG.
  
 
  0.436
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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