STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfH_10Putative HTH-type transcriptional regulator YdfH. (243 aa)    
Predicted Functional Partners:
yiaO_10
Extracytoplasmic solute receptor protein YiaO.
 
     0.845
mcbR_1
HTH-type transcriptional regulator McbR.
  
     0.768
CTQ79273.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.758
mcbR_2
HTH-type transcriptional regulator McbR.
  
     0.753
uxuA_1
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.737
CTQ80103.1
Transcriptional regulator NanR.
  
     0.732
mcbR_6
HTH-type transcriptional regulator McbR.
  
     0.730
CTQ65042.1
Transcriptional regulator NanR.
  
     0.717
mcbR_5
HTH-type transcriptional regulator McbR.
  
     0.709
mcbR_3
HTH-type transcriptional regulator McbR.
  
     0.687
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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