Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTQ79384.1 | CTQ79385.1 | LA5095_04764 | LA5095_04765 | Hypothetical protein. | Esterase, PHB depolymerase family. | 0.773 |
CTQ79384.1 | leuE | LA5095_04764 | LA5095_04763 | Hypothetical protein. | Leucine efflux protein. | 0.429 |
CTQ79385.1 | CTQ79384.1 | LA5095_04765 | LA5095_04764 | Esterase, PHB depolymerase family. | Hypothetical protein. | 0.773 |
CTQ79385.1 | leuE | LA5095_04765 | LA5095_04763 | Esterase, PHB depolymerase family. | Leucine efflux protein. | 0.429 |
leuE | CTQ79384.1 | LA5095_04763 | LA5095_04764 | Leucine efflux protein. | Hypothetical protein. | 0.429 |
leuE | CTQ79385.1 | LA5095_04763 | LA5095_04765 | Leucine efflux protein. | Esterase, PHB depolymerase family. | 0.429 |
leuE | pld1_3 | LA5095_04763 | LA5095_04760 | Leucine efflux protein. | Pyridoxal 4-dehydrogenase. | 0.465 |
leuE | polS_2 | LA5095_04763 | LA5095_04761 | Leucine efflux protein. | Sorbitol dehydrogenase. | 0.515 |
leuE | rhtC_2 | LA5095_04763 | LA5095_02831 | Leucine efflux protein. | Threonine efflux protein. | 0.774 |
pld1_3 | leuE | LA5095_04760 | LA5095_04763 | Pyridoxal 4-dehydrogenase. | Leucine efflux protein. | 0.465 |
pld1_3 | polS_2 | LA5095_04760 | LA5095_04761 | Pyridoxal 4-dehydrogenase. | Sorbitol dehydrogenase. | 0.711 |
polS_2 | leuE | LA5095_04761 | LA5095_04763 | Sorbitol dehydrogenase. | Leucine efflux protein. | 0.515 |
polS_2 | pld1_3 | LA5095_04761 | LA5095_04760 | Sorbitol dehydrogenase. | Pyridoxal 4-dehydrogenase. | 0.711 |
rhtC_2 | leuE | LA5095_02831 | LA5095_04763 | Threonine efflux protein. | Leucine efflux protein. | 0.774 |