Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTQ80658.1 | cph2_10 | LA5095_05899 | LA5095_05898 | Phosphate binding protein. | Bacteriophytochrome cph2. | 0.759 |
barA_1 | cph2_10 | LA5095_02548 | LA5095_05898 | Signal transduction histidine-protein kinase BarA. | Bacteriophytochrome cph2. | 0.740 |
barA_1 | cph2_2 | LA5095_02548 | LA5095_01842 | Signal transduction histidine-protein kinase BarA. | Bacteriophytochrome cph2. | 0.998 |
barA_1 | cph2_4 | LA5095_02548 | LA5095_02966 | Signal transduction histidine-protein kinase BarA. | Bacteriophytochrome cph2. | 0.991 |
barA_1 | cph2_7 | LA5095_02548 | LA5095_04076 | Signal transduction histidine-protein kinase BarA. | Bacteriophytochrome cph2. | 0.979 |
barA_1 | gmr_12 | LA5095_02548 | LA5095_05715 | Signal transduction histidine-protein kinase BarA. | Cyclic di-GMP phosphodiesterase Gmr. | 0.978 |
barA_1 | gmr_3 | LA5095_02548 | LA5095_00306 | Signal transduction histidine-protein kinase BarA. | Cyclic di-GMP phosphodiesterase Gmr. | 0.978 |
barA_1 | rpfG_1 | LA5095_02548 | LA5095_03938 | Signal transduction histidine-protein kinase BarA. | Cyclic di-GMP phosphodiesterase response regulator RpfG. | 0.459 |
barA_1 | yegE_1 | LA5095_02548 | LA5095_04634 | Signal transduction histidine-protein kinase BarA. | Putative diguanylate cyclase YegE. | 0.998 |
barA_1 | yegE_2 | LA5095_02548 | LA5095_04635 | Signal transduction histidine-protein kinase BarA. | Putative diguanylate cyclase YegE. | 0.998 |
cph2_10 | CTQ80658.1 | LA5095_05898 | LA5095_05899 | Bacteriophytochrome cph2. | Phosphate binding protein. | 0.759 |
cph2_10 | barA_1 | LA5095_05898 | LA5095_02548 | Bacteriophytochrome cph2. | Signal transduction histidine-protein kinase BarA. | 0.740 |
cph2_10 | cph2_2 | LA5095_05898 | LA5095_01842 | Bacteriophytochrome cph2. | Bacteriophytochrome cph2. | 0.733 |
cph2_10 | cph2_4 | LA5095_05898 | LA5095_02966 | Bacteriophytochrome cph2. | Bacteriophytochrome cph2. | 0.899 |
cph2_10 | cph2_7 | LA5095_05898 | LA5095_04076 | Bacteriophytochrome cph2. | Bacteriophytochrome cph2. | 0.732 |
cph2_10 | gmr_12 | LA5095_05898 | LA5095_05715 | Bacteriophytochrome cph2. | Cyclic di-GMP phosphodiesterase Gmr. | 0.726 |
cph2_10 | gmr_3 | LA5095_05898 | LA5095_00306 | Bacteriophytochrome cph2. | Cyclic di-GMP phosphodiesterase Gmr. | 0.727 |
cph2_10 | rpfG_1 | LA5095_05898 | LA5095_03938 | Bacteriophytochrome cph2. | Cyclic di-GMP phosphodiesterase response regulator RpfG. | 0.732 |
cph2_10 | yegE_1 | LA5095_05898 | LA5095_04634 | Bacteriophytochrome cph2. | Putative diguanylate cyclase YegE. | 0.729 |
cph2_10 | yegE_2 | LA5095_05898 | LA5095_04635 | Bacteriophytochrome cph2. | Putative diguanylate cyclase YegE. | 0.730 |
page 1 of 5