STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcV_6Inner membrane ABC transporter permease protein YdcV. (258 aa)    
Predicted Functional Partners:
potH_3
Putrescine transport system permease protein PotH.
 
 0.992
potA_9
Spermidine/putrescine import ATP-binding protein PotA.
 
 
  0.979
potD_2
Spermidine/putrescine-binding periplasmic protein precursor.
 
 
 0.973
potB_3
Spermidine/putrescine transport system permease protein PotB.
 
 0.932
potB_2
Spermidine/putrescine transport system permease protein PotB.
 
 0.929
potB_1
Spermidine/putrescine transport system permease protein PotB.
 
 0.924
potB_6
Spermidine/putrescine transport system permease protein PotB.
 
 0.901
potH_1
Putrescine transport system permease protein PotH.
 
 0.899
potF_3
Putrescine-binding periplasmic protein precursor; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.891
potF_1
Putrescine-binding periplasmic protein precursor.
 
 
 0.888
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.