BAJ49902.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAJ49902.1

Hypothetical protein. (486 aa)

Predicted Functional Partners:

tbp

0.963

BAJ50920.1

0.933

BAJ51348.1

0.932

BAJ50893.1

0.926

BAJ50340.1

0.877

BAJ50166.1

0.871

BAJ50980.1

0.868

BAJ51091.1

0.868

rpl23

0.866

BAJ49960.1

0.862

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ49902.1	BAJ49960.1	CSUB_C0037	CSUB_C0097	Hypothetical protein.	Threonyl/alanyl tRNA synthetase.	0.862
BAJ49902.1	BAJ50166.1	CSUB_C0037	CSUB_C0305	Hypothetical protein.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.871
BAJ49902.1	BAJ50340.1	CSUB_C0037	CSUB_C0479	Hypothetical protein.	Large subunit ribosomal protein L30.	0.877
BAJ49902.1	BAJ50893.1	CSUB_C0037	CSUB_C1041	Hypothetical protein.	Protein phosphatase.	0.926
BAJ49902.1	BAJ50920.1	CSUB_C0037	CSUB_C1068	Hypothetical protein.	Dual specificity protein phosphatase.	0.933
BAJ49902.1	BAJ50980.1	CSUB_C0037	CSUB_C1128	Hypothetical protein.	Conserved hypothetical protein.	0.868
BAJ49902.1	BAJ51091.1	CSUB_C0037	CSUB_C1240	Hypothetical protein.	Beta-lactamase domain protein; Putative mRNA 3-end processing factor.	0.868
BAJ49902.1	BAJ51348.1	CSUB_C0037	CSUB_C1497	Hypothetical protein.	Acetoin utilization protein AcuC; Histone deacetylase superfamily protein.	0.932
BAJ49902.1	rpl23	CSUB_C0037	CSUB_C0303	Hypothetical protein.	Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.866
BAJ49902.1	tbp	CSUB_C0037	CSUB_C1587	Hypothetical protein.	Transcription initiation factor TFIID TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.	0.963
BAJ49960.1	BAJ49902.1	CSUB_C0097	CSUB_C0037	Threonyl/alanyl tRNA synthetase.	Hypothetical protein.	0.862
BAJ50166.1	BAJ49902.1	CSUB_C0305	CSUB_C0037	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Hypothetical protein.	0.871
BAJ50166.1	BAJ50340.1	CSUB_C0305	CSUB_C0479	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L30.	0.998
BAJ50166.1	BAJ50893.1	CSUB_C0305	CSUB_C1041	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Protein phosphatase.	0.816
BAJ50166.1	rpl23	CSUB_C0305	CSUB_C0303	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.999
BAJ50166.1	tbp	CSUB_C0305	CSUB_C1587	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Transcription initiation factor TFIID TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.	0.449
BAJ50340.1	BAJ49902.1	CSUB_C0479	CSUB_C0037	Large subunit ribosomal protein L30.	Hypothetical protein.	0.877
BAJ50340.1	BAJ50166.1	CSUB_C0479	CSUB_C0305	Large subunit ribosomal protein L30.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
BAJ50340.1	BAJ50893.1	CSUB_C0479	CSUB_C1041	Large subunit ribosomal protein L30.	Protein phosphatase.	0.468
BAJ50340.1	BAJ50920.1	CSUB_C0479	CSUB_C1068	Large subunit ribosomal protein L30.	Dual specificity protein phosphatase.	0.402