Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ49920.1Cu2+-exporting ATPase. (845 aa)    
Predicted Functional Partners:
BAJ49919.1
Conserved hypothetical protein.
       0.773
BAJ49918.1
Transcriptional regulator; Lrp/AsnC family.
       0.705
BAJ49921.1
Cu2+-exporting ATPase.
       0.693
BAJ50566.1
Nitrite reductase (NO-forming).
 
     0.510
BAJ49916.1
Conserved hypothetical protein; PIN domain.
       0.470
BAJ49917.1
Conserved hypothetical protein.
       0.470
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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