BAJ49928.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAJ49928.1

Molybdenum cofactor biosynthesis protein A. (347 aa)

Predicted Functional Partners:

BAJ51458.1

0.999

BAJ51457.1

0.911

BAJ51043.1

0.897

BAJ51453.1

0.878

BAJ49929.1

0.832

BAJ50833.1

0.822

BAJ51124.1

0.810

BAJ51415.1

0.796

BAJ51042.1

0.795

BAJ51327.1

0.787

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ49928.1	BAJ49929.1	CSUB_C0064	CSUB_C0065	Molybdenum cofactor biosynthesis protein A.	Cytochrome b/b6 domain-containing protein.	0.832
BAJ49928.1	BAJ50833.1	CSUB_C0064	CSUB_C0980	Molybdenum cofactor biosynthesis protein A.	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	0.822
BAJ49928.1	BAJ51042.1	CSUB_C0064	CSUB_C1190	Molybdenum cofactor biosynthesis protein A.	FdhD/NarQ family/nitrate assimilation protein.	0.795
BAJ49928.1	BAJ51043.1	CSUB_C0064	CSUB_C1191	Molybdenum cofactor biosynthesis protein A.	Molybdopterin biosynthesis protein MoeA.	0.897
BAJ49928.1	BAJ51124.1	CSUB_C0064	CSUB_C1273	Molybdenum cofactor biosynthesis protein A.	Hypothetical protein.	0.810
BAJ49928.1	BAJ51327.1	CSUB_C0064	CSUB_C1476	Molybdenum cofactor biosynthesis protein A.	Ubiquitin-activating enzyme E1-like protein.	0.787
BAJ49928.1	BAJ51415.1	CSUB_C0064	CSUB_C1564	Molybdenum cofactor biosynthesis protein A.	Molybdopterin biosynthesis protein MoeA.	0.796
BAJ49928.1	BAJ51453.1	CSUB_C0064	CSUB_C1602	Molybdenum cofactor biosynthesis protein A.	Molybdenum cofactor biosynthesis protein E.	0.878
BAJ49928.1	BAJ51457.1	CSUB_C0064	CSUB_C1606	Molybdenum cofactor biosynthesis protein A.	Molybdenum cofactor biosynthesis protein B.	0.911
BAJ49928.1	BAJ51458.1	CSUB_C0064	CSUB_C1607	Molybdenum cofactor biosynthesis protein A.	Molybdenum cofactor biosynthesis protein C.	0.999
BAJ49929.1	BAJ49928.1	CSUB_C0065	CSUB_C0064	Cytochrome b/b6 domain-containing protein.	Molybdenum cofactor biosynthesis protein A.	0.832
BAJ50833.1	BAJ49928.1	CSUB_C0980	CSUB_C0064	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdenum cofactor biosynthesis protein A.	0.822
BAJ50833.1	BAJ51043.1	CSUB_C0980	CSUB_C1191	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdopterin biosynthesis protein MoeA.	0.699
BAJ50833.1	BAJ51327.1	CSUB_C0980	CSUB_C1476	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Ubiquitin-activating enzyme E1-like protein.	0.436
BAJ50833.1	BAJ51415.1	CSUB_C0980	CSUB_C1564	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdopterin biosynthesis protein MoeA.	0.699
BAJ50833.1	BAJ51453.1	CSUB_C0980	CSUB_C1602	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdenum cofactor biosynthesis protein E.	0.532
BAJ50833.1	BAJ51457.1	CSUB_C0980	CSUB_C1606	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdenum cofactor biosynthesis protein B.	0.727
BAJ50833.1	BAJ51458.1	CSUB_C0980	CSUB_C1607	Molybdopterin oxidoreductase molybdopterin binding subunit, N-terminal.	Molybdenum cofactor biosynthesis protein C.	0.532
BAJ51042.1	BAJ49928.1	CSUB_C1190	CSUB_C0064	FdhD/NarQ family/nitrate assimilation protein.	Molybdenum cofactor biosynthesis protein A.	0.795
BAJ51042.1	BAJ51043.1	CSUB_C1190	CSUB_C1191	FdhD/NarQ family/nitrate assimilation protein.	Molybdopterin biosynthesis protein MoeA.	0.710