STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ49986.1Metal-dependent phosphohydrolase. (388 aa)    
Predicted Functional Partners:
tmk
dTMP kinase.
       0.846
BAJ50099.1
Amidohydrolase.
     
 0.705
BAJ50716.1
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.700
BAJ51088.1
LPPG:Fo 2-phospho-L-lactate transferase.
       0.700
BAJ49985.1
Nitrogen fixation protein NifU.
  
    0.685
BAJ51113.1
Hypothetical protein.
       0.545
BAJ49984.1
Type I restriction enzyme R protein N terminal domain protein.
       0.494
BAJ49873.1
TatD DNase family protein.
 
    0.433
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.