STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ49992.1Conserved hypothetical protein; Belongs to the UPF0147 family. (93 aa)    
Predicted Functional Partners:
BAJ51229.1
Rieske (2Fe-2S) type ferredoxin.
       0.747
BAJ50586.1
Conserved hypothetical protein.
       0.700
BAJ50208.1
tRNA-intron endonuclease.
  
     0.644
albA-2
Archaea-specific DNA-binding protein AlbA; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
     0.638
albA
Archaea-specific DNA-binding protein AlbA; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
     0.611
BAJ49993.1
Citrate transporter.
       0.590
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.584
BAJ50017.1
Hypothetical protein.
 
    0.575
rpl37ae
Large subunit ribosomal protein L37Ae; Binds to the 23S rRNA.
 
     0.571
BAJ50771.1
Fe-S oxidoreductase; Radical SAM superfamily.
  
     0.496
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.