Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAJ50017.1 | BAJ50163.1 | CSUB_C0154 | CSUB_C0302 | Hypothetical protein. | Large subunit ribosomal protein L2. | 0.976 |
BAJ50017.1 | rpl1 | CSUB_C0154 | CSUB_C0156 | Hypothetical protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
BAJ50017.1 | rpl10 | CSUB_C0154 | CSUB_C0157 | Hypothetical protein. | Large subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
BAJ50017.1 | rpl11 | CSUB_C0154 | CSUB_C0155 | Hypothetical protein. | Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
BAJ50017.1 | rpl12 | CSUB_C0154 | CSUB_C0161 | Hypothetical protein. | Large subunit ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. | 0.765 |
BAJ50017.1 | rpl23 | CSUB_C0154 | CSUB_C0303 | Hypothetical protein. | Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.952 |
BAJ50017.1 | rps12 | CSUB_C0154 | CSUB_C0063 | Hypothetical protein. | Small subunit ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.984 |
BAJ50017.1 | rps19p | CSUB_C0154 | CSUB_C0300 | Hypothetical protein. | Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
BAJ50115.1 | BAJ50163.1 | CSUB_C0254 | CSUB_C0302 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L2. | 0.999 |
BAJ50115.1 | rpl1 | CSUB_C0254 | CSUB_C0156 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
BAJ50115.1 | rpl10 | CSUB_C0254 | CSUB_C0157 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
BAJ50115.1 | rpl11 | CSUB_C0254 | CSUB_C0155 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
BAJ50115.1 | rpl12 | CSUB_C0254 | CSUB_C0161 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. | 0.999 |
BAJ50115.1 | rpl21e | CSUB_C0254 | CSUB_C0184 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. | 0.999 |
BAJ50115.1 | rpl23 | CSUB_C0254 | CSUB_C0303 | Small subunit ribosomal protein S26e. | Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.999 |
BAJ50115.1 | rps12 | CSUB_C0254 | CSUB_C0063 | Small subunit ribosomal protein S26e. | Small subunit ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.999 |
BAJ50115.1 | rps19p | CSUB_C0254 | CSUB_C0300 | Small subunit ribosomal protein S26e. | Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
BAJ50163.1 | BAJ50017.1 | CSUB_C0302 | CSUB_C0154 | Large subunit ribosomal protein L2. | Hypothetical protein. | 0.976 |
BAJ50163.1 | BAJ50115.1 | CSUB_C0302 | CSUB_C0254 | Large subunit ribosomal protein L2. | Small subunit ribosomal protein S26e. | 0.999 |
BAJ50163.1 | rpl1 | CSUB_C0302 | CSUB_C0156 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
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