STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50023.1ABC-2 type transport system ATP-binding protein. (245 aa)    
Predicted Functional Partners:
BAJ51216.1
Sulfonate/nitrate/taurine ABC transporter ATP-binding protein.
    
0.905
BAJ50523.1
Maltooligosaccharide ABC transporter ATP-binding protein.
 
     
0.899
BAJ50095.1
Branched-chain amino acid ABC transporter ATP-binding protein.
    
0.847
BAJ51246.1
Lipoprotein-releasing system ATP-binding protein.
  
0.722
BAJ51194.1
Branched-chain amino acid ABC transporter ATP-binding protein.
    
0.707
rpl12
Large subunit ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
  
    0.648
BAJ50022.1
Hypothetical protein.
       0.620
BAJ50489.1
ABC-2 type transport system permease.
 
  
 0.573
BAJ50541.1
Maltooligosaccharide ABC transportor ATP-binding protein.
 
    
0.562
BAJ50665.1
ABC-2 type transport system permease.
 
  
 0.539
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.