Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAJ50163.1 | BAJ50166.1 | CSUB_C0302 | CSUB_C0305 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| BAJ50163.1 | BAJ50180.1 | CSUB_C0302 | CSUB_C0319 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L13. | 0.999 |
| BAJ50163.1 | BAJ50181.1 | CSUB_C0302 | CSUB_C0320 | Large subunit ribosomal protein L2. | Small subunit ribosomal protein S9. | 0.999 |
| BAJ50163.1 | BAJ50371.1 | CSUB_C0302 | CSUB_C0510 | Large subunit ribosomal protein L2. | Signal recognition particle receptor. | 0.873 |
| BAJ50163.1 | rpl22 | CSUB_C0302 | CSUB_C0463 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| BAJ50163.1 | rpl23 | CSUB_C0302 | CSUB_C0303 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| BAJ50163.1 | rpl24 | CSUB_C0302 | CSUB_C0469 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| BAJ50163.1 | rpl29 | CSUB_C0302 | CSUB_C0465 | Large subunit ribosomal protein L2. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
| BAJ50163.1 | srp19 | CSUB_C0302 | CSUB_C0289 | Large subunit ribosomal protein L2. | Signal recognition particle subunit SRP19; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. | 0.679 |
| BAJ50163.1 | srp54 | CSUB_C0302 | CSUB_C0186 | Large subunit ribosomal protein L2. | Signal recognition particle, subunit SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.996 |
| BAJ50166.1 | BAJ50163.1 | CSUB_C0305 | CSUB_C0302 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L2. | 0.999 |
| BAJ50166.1 | BAJ50180.1 | CSUB_C0305 | CSUB_C0319 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L13. | 0.999 |
| BAJ50166.1 | BAJ50181.1 | CSUB_C0305 | CSUB_C0320 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Small subunit ribosomal protein S9. | 0.999 |
| BAJ50166.1 | BAJ50371.1 | CSUB_C0305 | CSUB_C0510 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Signal recognition particle receptor. | 0.893 |
| BAJ50166.1 | rpl22 | CSUB_C0305 | CSUB_C0463 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| BAJ50166.1 | rpl23 | CSUB_C0305 | CSUB_C0303 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| BAJ50166.1 | rpl24 | CSUB_C0305 | CSUB_C0469 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| BAJ50166.1 | rpl29 | CSUB_C0305 | CSUB_C0465 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
| BAJ50166.1 | srp19 | CSUB_C0305 | CSUB_C0289 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Signal recognition particle subunit SRP19; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. | 0.672 |
| BAJ50166.1 | srp54 | CSUB_C0305 | CSUB_C0186 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Signal recognition particle, subunit SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.996 |
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