Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ50066.1Iron complex ABC transporter permease. (564 aa)    
Predicted Functional Partners:
BAJ50067.1
Iron complex ABC transporter substrate-binding protein.
 
 
 0.998
BAJ50064.1
ABC transporter ATP-binding protein.
 
 
  0.905
BAJ51113.1
Hypothetical protein.
       0.700
BAJ50068.1
Hypothetical protein.
       0.572
BAJ51545.1
Phosphonate ABC transporter ATP-binding protein.
     
 0.462
BAJ50716.1
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
     0.460
BAJ50523.1
Maltooligosaccharide ABC transporter ATP-binding protein.
 
    0.442
BAJ50541.1
Maltooligosaccharide ABC transportor ATP-binding protein.
 
    0.434
BAJ50904.1
Spermidine/putrescine ABC transporter permease.
 
     0.432
BAJ50542.1
Maltooligosaccharide ABC transporter ATP-binding protein.
 
    0.430
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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