Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50098.1Luciferase family protein. (328 aa)    
Predicted Functional Partners:
BAJ50099.1
Amidohydrolase.
       0.773
BAJ50100.1
Molybdopterin binding oxidoreductase large subunit; Molybdenum hydroxylase family, large subunit.
       0.701
BAJ50247.1
F420-dependent N5,N10-methenyltetrahydromethanopterin reductase.
  
     0.689
BAJ50097.1
Branched-chain amino acid ABC transporter substrate-binding protein.
       0.671
BAJ50095.1
Branched-chain amino acid ABC transporter ATP-binding protein.
  
    0.571
BAJ50093.1
Branched-chain amino acid ABC transporter permease.
       0.569
BAJ50094.1
Branched-chain amino acid ABC transporter permease.
       0.569
BAJ50096.1
Branched-chain amino acid ABC transporter ATP-binding protein.
       0.569
BAJ50101.1
Conserved hypothetical protein.
       0.496
BAJ50102.1
Conserved hypothetical protein.
       0.422
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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