Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50155.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
BAJ51391.1
Mannose-6-phosphate isomerase / glucose-6-phosphate isomerase.
 
  
 0.462
BAJ50154.1
Chromosome segregation protein SMC.
 
     0.458
rps8e
Small subunit ribosomal protein S8e.
 
     0.448
BAJ51316.1
Aminopeptidase N.
  
 
 0.435
BAJ50152.1
Segregation and condensation protein B.
     
 0.427
BAJ51425.1
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A.
   
   0.425
BAJ50153.1
Segregation and condensation protein A.
     
 0.414
BAJ51413.1
Basic amino acid/polyamine antiporter, APA family.
    
 0.401
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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